User:ElNando888/Blog/3D Hub

From Eterna Wiki

I'm pretty sure you all saw and read the latest dev blog published on the EteRNA website. Besides some thrilling news, there is mention of a very interesting site: the RNA 3D hub.

 

Exploring the long list of 3D motifs, I stumbled upon one titled "Bacterial 5S rRNA Loop E". Does it look familiar to you? It did to me... Turns out, it's the "crazy stack"!

 

<img style="width: 200px;" src="http://rna.bgsu.edu/img/MotifAtlas/IL1.4/IL_25230.3.png" alt="" />

 

For one, it's nice to finally have a proper name for that loop. But additionally, there's a list of sequence variants. Awesome! So, apparently, the sequence AAUGAUA-AAAAGUC would work exactly the same.

 

The list of variants is short though, so I'm planning on testing that main variant, along with some "hybrids". Stay tuned.

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